SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    1209, 1186, 114, 1810, 113, 1742, 1598, 
    1565, 1597, 1708, 1694, 1732, 1596, 
    1632, 79, 297, 1852, 1456, 653, 1465, 
    1494, 1620, 1619, 1457
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00129

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "cscart_product_prices",
      "access_type": "range",
      "possible_keys": ["usergroup", "product_id", "lower_limit", "usergroup_id"],
      "key": "product_id",
      "key_length": "3",
      "used_key_parts": ["product_id"],
      "rows": 24,
      "filtered": 4.897957802,
      "index_condition": "cscart_product_prices.product_id in (1209,1186,114,1810,113,1742,1598,1565,1597,1708,1694,1732,1596,1632,79,297,1852,1456,653,1465,1494,1620,1619,1457)",
      "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.usergroup_id in (0,1)"
    }
  }
}

Result

product_id price
79 60000.00000000
113 485000.00000000
114 380000.00000000
297 60000.00000000
653 144000.00000000
1186 21000.00000000
1209 21000.00000000
1456 22000.00000000
1457 0.00000000
1465 38000.00000000
1494 120000.00000000
1565 22000.00000000
1596 128000.00000000
1597 23000.00000000
1598 23000.00000000
1619 84000.00000000
1620 115000.00000000
1632 56000.00000000
1694 0.00000000
1708 70000.00000000
1732 30000.00000000
1742 32000.00000000
1810 285000.00000000
1852 22000.00000000