SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    1947, 1458, 1460, 1464, 1455, 1382, 1385, 
    1383, 1386, 25, 1758, 1757, 1734, 1254, 
    1684, 1379, 1378, 1792, 1791, 1793, 
    1789, 1716, 1714, 1715
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00117

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "cscart_product_prices",
      "access_type": "range",
      "possible_keys": ["usergroup", "product_id", "lower_limit", "usergroup_id"],
      "key": "product_id",
      "key_length": "3",
      "used_key_parts": ["product_id"],
      "rows": 26,
      "filtered": 4.897957802,
      "index_condition": "cscart_product_prices.product_id in (1947,1458,1460,1464,1455,1382,1385,1383,1386,25,1758,1757,1734,1254,1684,1379,1378,1792,1791,1793,1789,1716,1714,1715)",
      "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.usergroup_id in (0,1)"
    }
  }
}

Result

product_id price
25 0.00000000
1254 26000.00000000
1378 12000.00000000
1379 12000.00000000
1382 11000.00000000
1383 11000.00000000
1385 9000.00000000
1386 11000.00000000
1455 47000.00000000
1458 45000.00000000
1460 46000.00000000
1464 0.00000000
1684 19167.00000000
1714 36000.00000000
1715 37000.00000000
1716 36000.00000000
1734 14500.00000000
1757 14500.00000000
1758 14500.00000000
1789 5500.00000000
1791 5500.00000000
1792 10000.00000000
1793 5500.00000000
1947 100000.00000000